117) Izumi Katano, and Hideyuki Doi (2019) Effects of stream grazers with different functional traits on the spatial heterogeneity of periphyton mats. PeerJ accepted pending revision


116) Hideyuki Doi†, Keiichi Fukaya†, Shin-ichiro Oka, Keiichi Sato, Michio Kondoh, and Masaki Miya* (2019) Evaluation of detection probabilities at the water-filtering and initial PCR steps in environmental DNA metabarcoding using a multispecies site occupancy model. Scientific Reports in press  †The both authors equally contributed.  *Corresponding author


115) Teruhiko Takahara, Takashi Ikebuchi, Hideyuki Doi, and Toshifumi Minamoto (2019) Using environmental DNA to estimate the seasonal distribution and habitat preferences of a Japanese basket clam in Lake Shinji, Japan. Estuarine, Coastal and Shelf Science in press LINK


114) Kazuya Fujii†, Hideyuki Doi†*, Shunsuke Matsuoka, Mariko Nagano, Hirotoshi Sato, and Hiroki Yamanaka (2019) Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods. PLOS ONE 14: e0210357.  †The both authors equally contributed. *Corresponding author DOI: 10.1371/journal.pone.0210357 LINK


113) Hideyuki Doi and Helmut Hillebrand (2019) Historical contingency and productivity effects on food-chain length. Communications Biology 2: 40 DOI:10.1038/s42003-019-0287-8 LINK





112) Hideyuki Doi, Kwang-Hyeon Chang and Shin-ichi Nakano (2018) Trophic niche breadth of pond zooplankton species using stable isotope analysis and the relationship with the abiotic and biotic factors. Royal Society Open Science 6:180917. DOI: 10.1098/rsos.180917 LINK


111) Naoto F. Ishikawa†, Hideyuki Doi†, Jacques C. Finlay (2018) Global dataset for carbon and nitrogen stable isotope ratios of lotic periphyton. (Data paper) Ecological Research 33:1089–1089. †The both authors equally contributed. DOI: 10.1007/s11284-018-1623-z LINK


110) Mariko Nagano and Hideyuki Doi (2018) Degree of high phenotypic plasticity in wild populations of Daphnia in early spring. Journal of Limnology 77:309-315. DOI:10.4081/jlimnol.2018.1709 LINK


109) Masato Yamamichi Takehiro Kazama, Kotaro Tokita, Izumi Katano, Hideyuki Doi, Takehito Yoshida, Nelson G. Hairston Jr., and Jotaro Urabe (2018) A shady phytoplankton paradox: When phytoplankton increases under low light. Proceedings of the Royal Society B: Biological Sciences 285: 20181067 DOI:10.1098/rspb.2018.1067 LINK

*Featured by Sankei-Shinbun, and ESJ web site


108) Thierry Chambert, David S. Pilliod, Caren S. Goldberg, Hideyuki Doi, and Teruhiko Takahara (2018) An analytical framework for estimating aquatic species density from environmental DNA. Ecology and Evolution 8:3468–3477 DOI:10.1002/ece3.3764 LINK




107) Hirotoshi Sato, Yuki Sogo, Hideyuki Doi, and Hiroki Yamanaka (2017) Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities. Scientific Reports 7:14860 DOI:10.1038/s41598-017-14978-6 LINK


106) Hideyuki Doi*, Yoshihisa Akamatsu*, Yutaka Watanabe*, Masuji Goto, Ryutei Inui, Izumi Katano, Mariko Nagano, Teruhiko Takahara, and Toshifumi Minamoto (2017) Water sampling for environmental DNA surveys by using an unmanned aerial vehicle. Limnology and Oceanography Methods 15:939-944. DOI:10.1002/lom3.10214 LINK *These authors equally contributed.

*Featured by Asahi-Shinbun, Kobe-Shinbun, Kankyo TenboudaiYahoo News


105) Kimiko Uchii, Hideyuki Doi, Hiroki Yamanaka and Toshifumi Minamoto (2017) Distinct seasonal migration patterns of Japanese native and non-native genotypes of common carp estimated by environmental DNA. Ecology and Evolution 7:8512-8522 available  DOI:10.1002/ece3.3346 LINK


104) Hideyuki Doi, Fumikazu Akamatsu, and Angélica L. González (2017) Starvation effects on nitrogen and carbon stable isotopes of animals: an insight from meta-analysis of fasting experiments. Royal Society Open Science  4:170633. DOI:10.1098/rsos.170633 LINK 


103) Hideyuki Doi*Izumi Katano*, Yusuke Sakata, Rio Souma, Toshihiro Kosuge, Mariko Nagano, Kousuke Ikeda, Koki Yano, and Koji Tojo (2017) Detection of an endangered aquatic heteropteran using environmental DNA in a wetland ecosystem. Royal Society Open Science 4:170568 DOI: 10.1098/rsos.170568  LINK *The both authors equally contributed.

*Featured by Asahi-Shinbun, KensetsuKogyo-Shinbun, Tsukuba Science News


102) Hideyuki Doi, Oscar Gordo, Terutaka Mori, and Mayumi T. Kubo (2017) A macroecological perspective for phenological research under climate change. Ecological Research 32:633-641. DOI:10.1007/s11284-017-1480-1 LINK

*Nominated as a groundbreaking article for SpringerNature Change the World 2018


101) Izumi Katano*, Ken Harada*, Hideyuki Doi*, Rio Souma, and Toshifumi Minamoto (2017) Environmental DNA method for estimating salamander distribution in headwater streams, and a comparison of water sampling methods. PLOS ONE  12:e0176541 DOI:10.1371/journal.pone.0176541 LINK *These authors equally contributed. 


100) Izumi Katano, Hiromune Mitsuhashi, Hideyuki Doi, Yu Isobe, and Tadashi Oishi (2017) Distribution and drift dispersal dynamics of a caddisfly grazer in response to resource abundance and its ontogeny. Royal Society Open Science 4:160732 DOI:10.1098/rsos.160732 LINK

*Featured by Yomiuri-Shinbun


99) Hideyuki Doi, Kimiko Uchii, Saeko Matsuhashi, Teruhiko Takahara, Hiroki Yamanaka, and Toshifumi Minamoto (2017) Isopropanol precipitation method for collecting fish environmental DNA. Limnology and Oceanography: Methods 15:212-218 DOI:10.1002/lom3.10161 LINK


98) Toshifumi Minamoto, Kimiko Uchii, Teruhiko Takahara, Takumi Kitayoshi, Satsuki Tsuji, Hiroki Yamanaka and Hideyuki Doi (2017) Nuclear internal transcribed spacer-1 as a sensitive genetic marker for environmental DNA studies in common carp Cyprinus carpio. Molecular Ecology Resources 17: 324-333 DOI:10.1111/1755-0998.12586 LINK


97) Hideyuki Doi*, Ryutei Inui*, Yoshihisa Akamatsu, Kazuki Kanno, Hiroki Yamanaka, Teruhiko Takahara, and Toshifumi Minamoto (2017) Environmental DNA analysis for estimating the abundance and biomass of stream fish. Freshwater Biology 62:30-39. DOI:10.1111/fwb.12846 LINK *The both authors equally contributed.

*Featured by Sankei-Shinbun, Chugoku-Shinbun, Ube-Nippou, MyNavi news




96) Masaki Miya, Toshifumi Minamoto, Hiroki Yamanaka, Shin-ichiro Oka, Keiichi Sato, Satoshi Yamamoto, Tatsuya Sado, and Hideyuki Doi (2016) Use of a filter cartridge for filtration of water samples and extraction of environmental DNA. Journal of Visualized Experiments 117:e54741 DOI: 10.3791/54741 LINK (with Video instruction)


95)  Kousuke Ikeda*, Hideyuki Doi*, Kazunori Tanaka, Tadashi Kawai, and Junior N. Negishi (2016) Using environmental DNA to detect an endangered crayfish Cambaroides japonicus in streams. Conservation Genetics Resources 8: 231-234. DOI:10.1007/s12686-016-0541-z *The both authors equally contributed. LINK

*Featured by Asahi-Shinbun (Digital), Mainichi-Shinbun, Nikkei-Shinbun, Shinano Mainichi-Shinbun, Hokkaido Kensetsu-Shinbun, Hokkaido Tsushin, Nikkei Asian Review, Kobe-Shinbun Next news, Yahoo! news, 47News, ITmedia, MyNavi news, etc


94) Hideyuki Doi, and Teruhiko Takahara (2016) Global patterns of conservation research importance in different countries of the world. PeerJ 4:e2173 DOI:10.7717/peerj2173 LINK


93)  Saeko Matsuhashi, Hideyuki Doi, Ayaka Fujiwara, Sonoko Watanabe, and Toshifumi Minamoto (2016) Evaluation of the environmental DNA method for estimating distribution and biomass of submerged aquatic plants. PLOS ONE 11:e0156217 DOI:10.1371/journal.pone.0156217 LINK


92) Moriaki Yasuhara*, Hideyuki Doi*, Chih-Lin Wei*, Roberto Danovaro, and Sarah E. Myhre (2016) Biodiversity-ecosystem functioning relationships in long-term time series and paleoecological records: deep sea as a test bed. Philosophical Transactions of the Royal Society B: Biological Sciences 371:20150282 DOI:10.1098/rstb.2015.0282. *These authors equally contributed.  LINK


91) Ayaka Fujiwara, Saeko Matsuhashi, Hideyuki Doi, Satoshi Yamamoto, and Toshifumi Minamoto (2016) Use of environmental DNA to survey the distribution of an invasive submerged plant in ponds. Freshwater Science 35: 748-754. DOI:10.1086/685882 LINK


90) Takeshi Miki, and Hideyuki Doi* (2016) Leaf phenological shifts and plant-microbe-soil interactions can determine forest productivity and nutrient cycling under climate change in an ecosystem model. Ecological Research 31:263-274. DOI:10.1007/s11284-016-1333-3 LINK *Corresponding author


89) Kimiko UchiiHideyuki Doi, and Toshifumi Minamoto (2016) A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes. Molecular Ecology Resources 16:415-422. DOI:10.1111/1755-0998.12460 LINK

*Featured by ScienceDaily, EurekalertScience Newsline, Phys.orgHelpinus




88) Izumi KatanoHideyuki Doi*, Britas Klemens Eriksson, and Helmut Hillebrand (2015) A cross-system meta-analysis reveals coupled predation effects on prey biomass and diversity. Oikos 124:1427-1435. DOI:10.1111/oik.02430 LINK *Corresponding author 

*Featured by Oikos Editor's Choice


87) Susanne Menden-Deuer, Laura Bristow, Hideyuki Doi, Christopher Filstrup, Andrea Johnson, Kevin Rose, Xiao Xi, Amy Burgess, and Grace Wilkinson (2015) Big data on important issues: Assessing the needs of student and early career aquatic scientists. Limnology and Oceanography Bulletin 24:77-79. DOI:10.1002/lob.10052 LINK 


86) Noriyuki Koizumi, Teruhiko Takahara, Toshifumi Minamoto, Hideyuki Doi, Atsushi Mori, Keiji Watanabe, and Takeshi Takemura (2015) Preliminary experiment for detection method of fish inhabiting agricultural drainage canals using environmental DNA. IDRE Journal 297: IV_7-IV_8. DOI:10.11408/jsidre.83.IV_7 LINK 


85) Hideyuki Doi*, Teruhiko Takahara*, Toshifumi Minamoto, Saeko Matsuhashi, Kimiko Uchii, and Hiroki Yamanaka (2015) Droplet digital polymerase chain reaction (PCR) outperforms real-time PCR in the detection of environmental DNA from an invasive fish species. Environmental Science & Technology 49:5601-5608. DOI:10.1021/acs.est.5b00253 LINK *The both authors equally contributed.


84) Hideyuki Doi, Kimiko Uchii, Teruhiko Takahara, Saeko Matsuhashi, Hiroki Yamanaka, and Toshifumi Minamoto (2015) Use of droplet digital PCR for estimation of fish abundance and biomass in environmental DNA surveys. PLOS ONE 10:e0122763  DOI:10.1371/journal.pone.0122763 LINK

*Featured by,DNA barcoding Blog,Science Newsline


83) Teruhiko Takahara, Satoru Endo, Momo Takada, Yurika Oba, Wim Ikbal Nursal, Takeshi Igawa, Hideyuki Doi, Toshihiro Yamada, and Toshinori Okuda (2015) Radiocesium accumulation in the anuran frog, Rana tagoi tagoi, in forest ecosystems after the Fukushima Nuclear Power Plant accident. Environmental Pollution 199:89-94. DOI:10.1016/j.envpol.2015.01.018 LINK


82) Teruhiko Takahara, Toshifumi Minamoto, and Hideyuki Doi  (2015) Effects of sample processing on the detection rate of environmental DNA from the Common Carp (Cyprinus carpio). Biological Conservation 183:64-69. DOI:10.1016/j.biocon.2014.11.014 LINK




81) Kwang-Hyeon Chang, Hideyuki Doi, Yuichiro Nishibe, Gui-Sook Nam and Shin-ichi Nakano (2014) Feeding behavior of the copepod Temora turbinata: clearance rate and prey preference on the diatom and microbial food web components in coastal area. Journal of Ecology and Environment 37: 225-229. DOI:10.5141/ecoenv.2014.027 LINK


80) Izumi Katano, and Hideyuki Doi (2014) Stream grazers determine their crawling direction on the basis of chemical and particulate microalgal cues. PeerJ 2:e503 DOI:10.7717/peerj.503 LINK


79) Teruhiko Takahara, Mie N. Honjo, Kimiko Uchii, Toshifumi Minamoto, Hideyuki Doi, Takafumi Ito, and Zen’ichiro Kawabata (2014) Effects of daily temperature fluctuation on the survival of carp infected with Cyprinid herpesvirus 3. Aquaculture 433:208-213. DOI:10.1016/j.aquaculture.2014.06.001 LINK


78) Teruhiko Takahara, Toshifumi Minamoto, Hideyuki Doi, Takafumi Ito, and Zen’ichiro Kawabata (2014) Differences between domesticated Eurasian and Japanese indigenous strains of the common carp (Cyprinus carpio) in cortisol release following acute stressor. Ichthyological Research 61:165-168. DOI:10.1007/s10228-013-0385-4 LINK


77) Hideyuki Doi, Alexandre Heeren and Pierre Maurage (2014) Scientific activity is a better predictor of Nobel award chances than dietary habits and economic factors. PLOS ONE 9:e92612 DOI:10.1371/journal.pone.0092612 LINK

*Featured by XjentifikaSoylent NEWS




76) Hideyuki Doi, Elena I. Zuykova, Shuichi Shikano, Eisuke Kikuchi, Hiroshi Ota, Natalia I. Yurlova, and Elena Yadrenkina (2013) Isotopic evidence for the spatial heterogeneity of the planktonic food webs in the transition zone between river and lake ecosystems. PeerJ 1:e222 DOI:10.7717/peerj.222 LINK

*Featured by PeerJ Blog


75) Hideyuki Doi (2013) The “four-color issue” in ecology for considering ecosystem boundaries. Web Ecology 13:91-93. DOI:10.5194/we-13-91-2013 LINK


74) Hideyuki Doi, Izumi Katano, Junjiro N. Negishi, Seiji Sanada, and Yuichi Kayaba (2013) Effects of biodiversity, habitat structure, and water quality on human recreational use of rivers. Ecosphere 4:102 DOI:10.1890/ES12-00305.1 LINK

*Featured by Kobe-Shinbun, Chugoku-Shinbun, Mynavi news, Yahoo! news, etc


73) Hideyuki Doi, Kwang-Hyeon Chang, Yuichiro Nishibe, Hiroyuki Imai, and Shin-ichi Nakano (2013) Lack of congruence in species diversity indices and community structures of planktonic groups based on local environmental factors. PLOS ONE 8:e69594 DOI:10.1371/journal.pone.0069594 LINK


72) Teruhiko Takahara, Toshifumi Minamoto, and Hideyuki Doi (2013) Using environmental DNA to estimate the distribution of an invasive fish species in ponds. PLOS ONE 8:e56584 DOI:10.1371/journal.pone.0056584 LINK

*Featured by Asahi-Shinbun, Yomiuri-Shinbun, Mainichi-Shinbun, Sankei-Shinbun, Chugoku-Shinbun, Nikkei-Shinbun, Tokyo-Shinbun, Kyodonews, 47News, etc. 


71) Hideyuki Doi, and Terutaka Mori (2013) The discovery of species-abundance distribution in an ecological community. Oikos 122:179-182. DOI:10.1111/j.1600-0706.2012.00068.x LINK 

*Appendix (English translation of Motomura (1932) ): LINK

*Featured by Faculty of Science, Tohoku UniversityOikos Blog 


70) Teruhiko Takahara, Hideyuki Doi, Yukihiro Kohmatsu, and Ryohei Yamaoka (2013) Different chemical cues

originating from a shared predator induce common defense response in two prey species. Animal Cognition 16:147-153. DOI:10.1007/s10071-012-0565-z LINK 




69) Oscar Gordo and Hideyuki Doi* (2012) Drivers of population variability in phenological responses to climate change in Japanese birds. Climate Research 54:95-112. DOI:10.3354/cr01099 LINK *Corresponding author


68) Naoto F. Ishikawa*, Hideyuki Doi*, and Jacques C. Finlay (2012) Global meta-analysis for controlling factors on carbon stable isotope ratio of lotic periphyton. Oecologia 170:541-549. DOI:10.1007/s00442-012-2308-x LINK *Both authors contributed equally to the paper.


67) Hideyuki Doi (2012) Response of the Morus bombycis growing season to temperature and its latitudinal pattern in Japan. International Journal of Biometeorology 56:895-902. DOI:10.1007/s00484-011-0495-5 LINK


66) Teruhiko Takahara, Yukihiro Kohmatsu, Atsushi Maruyama, Hideyuki Doi, Hiroki Yamanaka, and Ryohei Yamaoka (2012) Inducible defense behavior of an anuran tadpole: cue-detection range and cue types against predator. Behavioral Ecology 23:863-868. DOI:10.1093/beheco/ars044 LINK


65) Hideyuki Doi, M. Jake Vander Zanden, and Helmut Hillebrand (2012) Shorter food-chain lengths in ancient lakes:Evidence from a global synthesis. PLoS ONE 7:e37856. DOI:10.1371/journal.pone.0037856 LINK

*Recommended by Faculty of 1000,  Featured by Chugoku-Shinbun


64) Hideyuki Doi (2012) Resource productivity and availability impacts for food-chain length. Ecological Research 27:521-527. DOI:10.1007/s11284-012-0941-9 LINK *Denzaburo Miyadi Award review


63) Oscar Gordo and Hideyuki Doi* (2012) Spring phenology delays in an insular semitropical songbird: Is response to climate change constrained by population size? Journal of Ornithology 153:355-366. DOI:10.1007/s10336-011-0750-x LINK *Corresponding author


62) Teruhiko Takahara, Toshifumi Minamoto, Hiroki Yamanaka, Hideyuki Doi, and Zen’ichiro Kawabata (2012) Estimation of fish biomass using environmental DNA. PLoS ONE 7:e35868 DOI:10.1371/journal.pone.0035868 LINK

*Featured by TV-ShinHiroshima news, Yomiuri-Shinbun, Mainichi-Shinbun, Chugoku-Shinbun, Nikkei-Shinbun


61) Takefumi Nakazawa and Hideyuki Doi* (2012) A perspective on match/mismatch of phenology in community contexts. Oikos 121:489–495. DOI:10.1111/j.1600-0706.2011.20171.x LINK *Corresponding author


60) Hideyuki Doi, Teruhiko Takahara and Kazuya Tanaka (2012) Trophic position and metabolic rate predict long-term decay process on radioactive cesium in fish: A meta-analysis. PLoS ONE 7:e29295 DOI:10.1371/journal.pone.0029295 LINK

*Featured by NHK E-TV “Science Zero”, NHK-TV Hiroshima news, NHK Online, Yomiuri-Shinbun, Mainichi-Shinbun, Chugoku-Shinbun, Nikkei-Shinbun, Tokyo-Shinbun, Kyodonews, Yahoo! news, 47News, etc




59) Seiko Mizuta, Maiko Kusaba, Hiroyuki Imai, Kwang-Hyeon Chang, Hideyuki Doi, Yuichiro Nishibe and Shin-ichi Nakano (2011) Grazing on Microcystis (Cyanophyceae) by testate amoebae with special reference to cyanobacterial abundance and physiological state. Limnology 12:205-211. DOI:10.1007/s10201-010-0341-1 LINK


58) Yoshito Chikaraishi, Nanako O. Ogawa, Hideyuki Doi, and Naohiko Ohkouchi (2011) 15N/14N ratio of amino acids as a tool for studying terrestrial food webs: a case study of the terrestrial insects (bee, wasp, and hornet). Ecological Research 26:835-844. DOI:10.1007/s11284-011-0844-1 LINK *Awarded the 12th Ecological Research Award


57) Hideyuki Doi*, and Natalia I. Yurlova* (2011) Host-parasite interactions and global climate oscillations. Parasitology 138:1022-1028. DOI:10.1017/S0031182011000655 LINK *Both authors contributed equally to this paper.


56) Hideyuki Doi*, and Natalia I. Yurlova* (2011) Consequent effects of parasitism on population dynamics, food web and human health under climate change. Ambio 40:332-334. DOI:10.1007/s13280-010-0068-6 LINK *Both authors contributed equally to this paper.


55) Kwang-Hyeon Chang, Masaki Sakamoto, Jin-Yong Ha, Yuichi Miyabara, Tomoki Murakami, Shin-ichi Nakano, Hideyuki Doi, and Takayuki Hanazato (2011) Response of plankton community in eutrophicated system to herbicide application (triazine herbicide, simetryn): short-term exposure experiment using microcosms. Limnology 12:11-16 DOI:10.1007/s10201-010-0317-1 LINK


54) Junjiro N. Negishi, Hideyuki Doi, Izumi Katano, and Yuichi Kayaba (2011) Seasonally tracking vertical and horizontal distribution of unionid mussels (Pronodularia japanensis): Implications for agricultural drainage management. Aquatic Conservation: Marine and Freshwater Environments 21:49-56. DOI:10.1002/aqc.1153 LINK


53) Hideyuki Doi, Kwang-Hyeon Chang, and Shin-ichi Nakano (2011) Nitrogen and carbon isotope fractionations of zooplankton consumers in ponds: Potential effect of seston stoichiometry. Marine and Freshwater Research 62:66-71.DOI:10.1071/MF10090 LINK




52) Hideyuki Doi, Toru Kobari, Kayoko Fukumori, Yuichiro Nishibe and Shin-ichi Nakano (2010) Trophic niche breadth variability differs among three Neocalanus species in the subarctic Pacific Ocean. Journal of Plankton Research 32:1733-1737. DOI:10.1093/plankt/fbq083 LINK


51) Hideyuki Doi, Natalia I. Yurlova, Eisuke Kikuchi, Shuichi Shikano, Elena Yadrenkina, and Elena I. Zuykova (2010) Stable isotopes indicate individual level trophic diversity in a freshwater model Gastropod, Lymnaea stagnalis. Journal of Molluscan Studies 76:384-388. DOI:10.1093/mollus/eyq020 LINK


50) Hideyuki Doi, Kwang-Hyeon Chang, and Shin-ichi Nakano (2010) Dispersal, connectivity, and local conditions determine zooplankton community in artificially connected ponds. Aquatic Biology 10:47-55. DOI:10.3354/ab00262 LINK


49) Kwang-Hyeon Chang, Hideyuki Doi, Yuichiro Nishibe, and Shin-ichi Nakano (2010) Feeding habit of omnivorous Asplanchna: comparison of diet composition among Asplanchna herricki, A. priodonta and A. girodi in pond ecosystems. Journal of Limnology 69:209-216. DOI:10.4081/jlimnol.2010.209 LINK


48) Hideyuki Doi, Eisuke Kikuchi, Shigeto Takagi, and Shuichi Shikano (2010) Differences in nitrogen and carbon stable isotopes between planktonic and benthic microalgae. Limnology 11:185-192. DOI:10.1007/s10201-009-0297-1 LINK


47) Hideyuki Doi*, Natalia I. Yurlova*, Svetlana N. Vodyanitskaya, Gen Kanaya, Shuichi Shikano and Eisuke Kikuchi  (2010) Estimating isotope fractionations between cercariae and host snail using isotope measurements designed for very small organism. Journal of Parasitology 96:314-317. DOI:10.1645/GE-2245.1 LINK *Both authors contributed equally to this paper.


46) Hideyuki Doi, Mehdi Cherif, Tsubasa Iwabuchi, Izumi Katano, James C. Stegen, and Maren Striebel (2010) Integrating elements and energy through the metabolic dependencies of gross growth efficiency and the threshold elemental ratio. Oikos 119:752-765. DOI: 10.1111/j.1600-0706.2009.18540.x LINK  *All authors contributed equally to the paper.


45) Hideyuki Doi, Kwang-Hyeon Chang, Takamitsu Ando, Hiroyuki Imai, and Shin-ichi Nakano (2010) Shoreline bank construction modifies benthic-pelagic coupling of food webs. Ecological Engineering 36:601-604. DOI:10.1016/j.ecoleng.2009.12.017 LINK


44) Hideyuki Doi, Mayumi Takahashi and Izumi Katano (2010) Genetic diversity increases regional variations in phenological responses to climate change. Global Change Biology 16:373-379. DOI:10.1111/j.1365-2486.2009.01993.x LINK

*Featured by the cover photo of the issue: Japanese cherry flower (Prunus x yedoensis, Someiyoshino)




43) Gen Kanaya, Elena N. Yadrenkina, Elena I. Zuykova, Eisuke Kikuchi, Shuichi Shikano, Chitoshi Mizota, Hideyuki Doi, and Nataliya I. Yurlova (2009) Contribution of organic matter sources to cyprinid fishes in the Chany Lake-Kargat River estuary, western Siberia. Marine and Freshwater Research 60:510-518. DOI: 10.1071/MF08108 LINK


42) Izumi Katano, Hideyuki Doi, and Tadashi Oishi (2009) Upstream resource abundance determines the food searching behavior of a stream grazer: Effect of microalgal cues. Limnology and Oceanography 54:1162-1166. DOI:10.4319/lo.2009.54.4.1162 LINK


41) Hideyuki Doi, and Eisuke Kikuchi (2009) Conservation and research in extreme environments. Frontiers in Ecology and the Environment 7:239. DOI:10.1890/09.WB.014 LINK



40) Izumi Katano, Junjiro N. Negishi, Tomoko Minagawa, Hideyuki Doi, Yôichi Kawaguchi, and Yuichi Kayaba (2009) Longitudinal macroinvertebrate organization over contrasting discontinuities: effects of a dam and a tributary. Journal of the North American Benthological Society 28:331-351. DOI:10.1899/08-010.1 LINK


39) Kwang-Hyeon Chang, Hideyuki Doi, Yuichiro Nishibe, Yumiko Obayashi, and Shin-ichi Nakano (2009) Spatial and temporal distribution of zooplankton communities of coastal marine waters receiving different human activities (fish and pearl oyster farmings). The Open Marine Biology Journal 3:83-88. DOI: 10.2174/1874450800903010083 LINK


38) Hideyuki Doi, Masatoshi Matsumasa, Mamoru Fujikawa, Keiichi Kanou, Takao Suzuki, and Eisuke Kikuchi (2009) Macroalgae and seagrass contribution to gastropods in sub-tropic and temperate tidal flats. Journal of Marine Biological Association of the United Kingdom 89:399-404. DOI:10.1017/S0025315408002683 LINK


37) Chitoshi Mizota, Hideyuki Doi, Eisuke Kikuchi, Shuichi Shikano, Takeshi Kakegawa, Natalia I. Yurlova, and A. I. Yurlova (2009) Stable isotopic characterization of fluids from Lake Chany Complex, western Siberia, Russia. Applied Geochemistry 24:319-327. DOI:10.1016/j.apgeochem.2008.10.009 LINK


36) Hideyuki Doi (2009) Spatial patterns of autochthonous and allochthonous resources in aquatic food webs. Population Ecology 51:57-64. DOI:10.1007/s10144-008-0127-z LINK


35) Hideyuki Doi, Kwang-Hyeon Chang, Takamitsu Ando, Hiroyuki Imai, Ippei Ninomiya, and Shin-ichi Nakano (2009) Resource availability and ecosystem size predict food-chain lengths in pond ecosystems. Oikos 118:138-144. DOI:10.1111/j.1600-0706.2008.17171.x LINK




34) Motomi Genkai-Kato, Miyuki Onishi, Hideyuki Doi, Kentaro Nozaki, Hitoshi Miyasaka, and Koji Omori (2008) Photosynthetic property of phytoplankton and their primary production on a sublittoral sand bank off Hojo, Ehime. Ecological Research 23:1025-1032. DOI:10.1007/s12601-009-0017-0 LINK



33) Kwang-Hyeon Chang, Hideyuki Doi, Hiroyuki Imai, Fusako Gunji, and Shin-ichi Nakano (2008) Longitudinal changes in zooplankton distribution below a reservoir outfall with reference to river planktivory. Limnology 9:125-133. DOI:10.1007/s10201-008-0244-6 LINK



32) Hideyuki Doi (2008) Delayed phenological timing of dragonfly emergence in Japan over five decades. Biology Letters 4:388-391. DOI:10.1098/rsbl.2008.0234 LINK


31) Hideyuki Doi, Oscar Gordo, and Izumi Katano (2008) Heterogeneous intra-annual climatic changes drive different phenological responses in two trophic levels. Climate Research 36:181-190. DOI:10.3354/cr00741 LINK


30) Kayoko Fukumori, Misa Oi, Hideyuki Doi, Daisuke Takahashi, Noboru Okuda, Todd W. Miller, Michinobu Kuwae, Hitoshi Miyasaka, Motomi Genkai-Kato, Yoshitsugu Koizumi, Koji Omori, and Hidetaka Takeoka (2008) Bivalve tissue as a carbon and nitrogen isotope baseline indicator in coastal ecosystems. Estuarine, Costal and Shelf Science 79:45-50. DOI:10.1016/j.ecss.2008.03.004 LINK


29) Hideyuki Doi, and Mayumi Takahashi (2008) Latitudinal patterns in phenological responses of leaf colouring and leaf fall to climate change in Japan. Global Ecology and Biogeography 17:556-561. DOI:10.1111/j.1466-8238.2008.00398.x LINK

*Featured by BBC Earth


28) Hideyuki Doi, Kwang-Hyeon Chang, Takamitsu Ando, Hiroyuki Imai, Shin-ichi Nakano, Akio Kajimoto, and Izumi Katano (2008) Drifting plankton from a reservoir subsidize downstream food webs and alter community structure. Oecologia 156: 363-371.DOI:10.1007/s00442-008-0988-z LINK


27) Hideyuki Doi, and Izumi Katano (2008) Distribution patterns of stream grazers and relationships between grazers and periphyton at multiple spatial scales. Journal of the North American Benthological Society 27:295–303. DOI:10.1899/07-067.1 LINK


26) Hitoshi Miyasaka, Motomi Genkai-Kato, Yo Miyake, Daisuke Kishi, Izumi Katano, Hideyuki Doi, Shin-ya Ohba, and Naotoshi Kuhara (2008) Relationships between length and weight of freshwater macroinvertebrates in Japan. Limnology 9:75-80. DOI: 10.1007/s10201-008-0238-4 LINK


25) Hideyuki Doi, and Izumi Katano (2008) Phenological timing of leaf budburst with climate change in Japan. Agricultural and Forest Meteorology 148:512-516. DOI:10.1016/j.agrformet.2007.10.002 LINK


24) Hideyuki Doi, Natalia I. Yurlova, Svetlana N. Vodyanitskaya, Eisuke Kikuchi, Shuichi Shikano, Elena I. Zuykova, and Elena N. Yadrenkina (2008) Parasite-induced changes in nitrogen isotope signatures of host tissues. Journal of Parasitology 94:292-295. DOI:10.1645/GE-1228.1 LINK


23) Hideyuki Doi, Kwang-Hyeon Chang, Yumiko Obayashi, Mizuho Yoshihara, Mary Shime, Takako Yamamoto, Yuichiro Nishibe, and Shin-ichi Nakano (2008) Attached microalgae contribute to planktonic food webs in bays with fish and pearl oyster farms. Marine Ecology Progress Series 354:123-132. DOI:10.3354/meps07202 LINK 


22) Kayoko Fukumori, Misa Oi, Hideyuki Doi, Noboru Okuda, Hitomi Yamaguchi, Michinobu Kuwae, Hitoshi Miyasaka, Kenji Yoshino, Yoshitsugu Koizumi, Koji Omori, and Hidetaka Takeoka (2008) Food sources of the pearl oyster in coastal ecosystems of Japan: Evidence from diet and stable isotope analysis. Estuarine, Coastal and Shelf Science 76:704-709. DOI:10.1016/j.ecss.2007.07.046 LINK




21) Izumi Katano*, Hideyuki Doi, Akiko Houki, Yu Isobe, and Tadashi Oishi (2007) Changes in periphyton abundance and community structure with the dispersal of a caddisfly grazer, Micrasema quadriloba. Limnology 8:219-226. DOI:10.1007/s10201-007-0211-7 LINK

*Awarded the Yoshimura Award of Japanese Society of Limnology


20) Hideyuki Doi, Yasuhiro Takemon, Taichi Ohta, Yuko Ishida and Eisuke Kikuchi (2007) Effects of reach scale canopy cover on trophic pathways of caddisfly larvae in a Japanese mountain stream. Marine and Freshwater Research 58:811–817. DOI:10.1071/MF07067 LINK 

*Featured as back-cover photo of the issue


19) Hideyuki Doi (2007) Winter flowering phenology of Japanese apricot Prunus mume reflects climate change across Japan. Climate Research 34:99-104. DOI: 10.3354/cr03409 LINK

*Featured by BBC Earth


18) Hideyuki Doi, Atsushi Takagi, and Eisuke Kikuchi (2007) Stream macroinvertebrate community affected by point-source metal pollution. International Review of Hydrobiology 92:258-266. DOI:10.1002/iroh.200610923 LINK


17) Hideyuki Doi, Eisuke Kikuchi, Shigeto Takagi, and Shuichi Shikano (2007) Changes in carbon and nitrogen stable isotopes of chironomid larvae during growth, starvation and metamorphosis. Rapid Communications in Mass Spectrometry 21:997-1002. DOI:10.1002/rcm.2925 LINK




16) Hideyuki Doi, Atsushi Takagi, Chitoshi Mizota, Jun-ichi Okano, Shin-ichi Nakano and Eisuke Kikuchi (2006) Contribution of chemoautotrophic productions to freshwater macroinvertebrates in a headwater stream using multiple stable isotopes. International Review of Hydrobiology 91:501-508. DOI: 10.1002/iroh.200610898 LINK


15) Hideyuki Doi, Elena Zuykova, Eisuke Kikuchi, Shuichi Shikano, Keiichi Kanou, Natalia Yurlova, and Elena Yadrenkina (2006) Spatial changes in carbon and nitrogen stable isotope of the plankton food web in a saline lake ecosystem. Hydrobiologia 571:395-400. DOI:10.1007/s10750-006-0205-1 LINK


14) Elena I. Zuykova, Hideyuki Doi, Eisuke Kikuchi, Shuichi Shikano, and Natalia Yurlova (2006) The zooplankton of Lake Chany, West Siberia, Russia. Journal of Freshwater Ecology 21:181-182. DOI:10.1080/02705060.2006.9664112  LINK


13) Hideyuki Doi, Eisuke Kikuchi, Shigeto Takagi, and Shuichi Shikano (2006) Selective assimilation by deposit feeders: Experimental evidence using stable isotope ratios. Basic and Applied Ecology 7:159-166. DOI:10.1016/j.baae.2005.04.011 LINK


12) Hideyuki Doi, Izumi Katano, and Eisuke Kikuchi (2006) The use of algal-mat habitat by aquatic insect grazers: effects of microalgal cue. Basic and Applied Ecology 7:153-158. DOI:10.1016/j.baae.2005.04.009 LINK




11) Shuichi Shikano, Eisuke Kikuchi, Shigeto Takagi, and Hideyuki Doi (2005) Interannual variations of limnological and ecological characteristics in acidic Lake Katanuma. Korean Journal of Limnology (Special Issue) 38: 435-438. LINK


10) Shigeto Takagi, Eisuke Kikuchi, Hideyuki Doi, and Shuichi Shikano (2005)  Swimming behavior of Chironomus acerbiphilus larvae in Lake Katanuma. Hydrobiologia 548:153-165. DOI: 10.1007/s10750-005-5196-9 LINK  


9) Hideyuki Doi, Masatoshi Matsumasa, Terumasa Toya, Nobuya Satoh, Chitoshi Mizota, Yonosuke Maki, and Eisuke Kikuchi (2005) Spatial shifts in food sources for macrozoobenthos in an estuarine ecosystem: Carbon and nitrogen stable isotope analyses. Estuarine, Coastal and Shelf Science 64:316-322. DOI:10.1016/j.ecss.2005.02.028 LINK


8) Hideyuki Doi, Eisuke Kikuchi, Shigeto Takagi, and Shuichi Shikano (2005) Carbon stable isotope ratios of phytoplankton and benthic diatoms in Lake Katanuma with reference to those of other lakes. Korean Journal of Limnology (Special Issue) 38:8-11. LINK




7) Hideyuki Doi, Eisuke Kikuchi, Chitoshi Mizota, Nobuya Satoh, Shuichi Shikano, Natalia Yurlova, Elena Zuykova, and Elena Yadrenkina (2004) Carbon, nitrogen, and sulfur isotope changes and hydro-geological processes in a saline lake chain. Hydrobiologia 529:225-235. DOI:10.1007/s10750-004-6418-2 LINK 


6) Shuichi Shikano, Eisuke Kikuchi, Shigeto Takagi, and Hideyuki Doi (2004) Volcanic heat flux and short-term holomixis during the summer stratification period in a crater lake. Limnology and Oceanography 49:2287-2292.

DOI:10.4319/lo.2004.49.6.2287 LINK


5) Hideyuki Doi, Eisuke Kikuchi, Shuichi Shikano, and Shigeto Takagi (2004) A study of nitrogen stable isotope dynamics of phytoplankton in a simple natural ecosystem. Aquatic Microbial Ecology 36:285-291. DOI:10.3354/ame036285 LINK





4) Hideyuki Doi, Eisuke Kikuchi, Shuji Hino, Takeru Itoh, Shigeto Takagi, and Shuichi Shikano (2003) Seasonal dynamics of carbon stable isotope ratios of particulate organic matter and benthic diatoms in strongly acidic Lake Katanuma. Aquatic Microbial Ecology 33:87-94.  DOI:10.3354/ame033087  LINK


3) Hideyuki Doi, Eisuke Kikuchi, Shuji Hino, Takeru Itoh, Shigeto Takagi, and Shuichi Shikano (2003) Isotopic (δ13C) evidence for autochthonous origin of sediment organic matter in small, acidic Lake Katanuma, Japan. Marine and Freshwater Research 54:253-257. DOI:10.1071/MF02035 LINK




2) Hideyuki Doi, and Eisuke Kikuchi (2002) Analysis of food sources for Chironomus acerbiphilus larvae in strongly acidic Lake Katanuma. Japanese Journal of Limnology 63:160-162. DOI: 10.3739/rikusui.63.155 (in Japanese) LINK




1) Hideyuki Doi*, Eisuke Kikuchi, and Shuichi Shikano (2001) Carbon and nitrogen stable isotope ratios analysis of food sources for Chironomus acerbiphilus larvae (Diptera Chironomidae) in strongly acidic Lake Katanuma. Radioisotopes  50:601-610. DOI: 10.3769/radioisotopes.50.12_601 LINK

*Awarded Radioisotopes Journal award



B3) Hideyuki Doi, Fujio Hyodo and Naoto Ishikawa (2016) Analysis of Diets and Food Webs Using Stable Isotopes. Handbook of Methods in Ecological Research 6,  Kyoritsu Press   (in Japanese)


占部城太郎・日浦勉・辻和希 編 生態学フィールド調査法シリーズ 第6巻 共立出版 2016年 LINK



B2) Hideyuki Doi, and Izumi Katano (2012) Chapter 6, Ecology Series 9,  Kyoritsu Press (in Japanese)

シリーズ現代の生態学 第9巻 「淡水生態学のフロンティア」 吉田丈人・鏡味麻衣子・加藤元海 編 第6章

土居秀幸・片野泉「河川生態系の被食ー捕食関係と食物網」 共立出版 2012年 LINK



B1) Hideyuki Doi (2008) Chapter 2, Community Ecology Series 4,  Kyoto University Press (in Japanese)

シリーズ群集生態学4 「生態系と群集をむすぶ」 大串隆之・近藤倫生・仲岡雅裕 編 第2章 

土居秀幸「生物群集が支える湖沼生態系の物質循環」 京都大学学術出版会 2008年 LINK